dna sequencing analysis software program version 5.1 (Thermo Fisher)
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dna sequencing analysis software program version 5.1
Dna Sequencing Analysis Software Program Version 5.1, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+program+for+dna+sequencing/sequencing+analysis+software+v5+3+1/pmc07865561-232-5-12
Average 90 stars, based on 1 article reviews
Dna Sequencing Analysis Software Program Version 5.1, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+program+for+dna+sequencing/sequencing+analysis+software+v5+3+1/pmc07865561-232-5-12
Average 90 stars, based on 1 article reviews
dna sequencing analysis software program version 5.1 - by Bioz Stars,
2026-10
90/100 stars
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Recombinant:Article Title: The Developmental and Genetic Architecture of the Sexually Selected Male Ornament of Swordtails. Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, Peptides, and Recombinant Proteins TRIzol Reagent Invitrogen Cat#15596026 dNTPs (Set, 100mM) Sigma-Aldrich Cat#DNTP100 DNase, RNase-free Thermo Scientific Cat#EN0521 SYBR Green I (10 000x in DMSO) Invitrogen Cat#S7563 Q5 High Fidelity DNA Polymerase New England Biolabs Cat#M04915 Critical Commercial Assays AmpliCap-Max T7 High Yield Message Maker Kit Biozym Cat#150472 RevertAid First Strand cDNA Synthesis Kit Thermo Scientific Cat#K1621 Deposited Data kcnh8 sequences this paper https://github.com/dukecomeback/swordtail/blob/main/ kcnh8_Xiphophorus.fa RNA-seq short read sequences 16 and this paper ENA accession code PRJEB8012 and PRJNA673149 Experimental Models: Organisms/Strains Xiphophorus hellerii, Rio Lancetilla strain Biocenter Würzburg WLC1337 Xiphophorus maculatus, Rio Jamapa strain Jp163A Biocenter Würzburg WLC6628 Xiphophorus montezumae, Tamasops strain Biocenter Würzburg WLC1052 Xiphophorus monticolus, El Tejon strain Biocenter Würzburg WLC3344 Xiphophorus pygmaeus, strain Rio Axtla Biocenter Würzburg WLC3015 Priapella lacandonae Biocenter Würzburg WLC5281 Oryzias latipes, Carbio strain Biocenter Würzburg WLC2674 Oligonucleotides Oligonucleotide Primers for PCR see Table S3 for Article Title: Sox9 in mouse urogenital sinus epithelium mediates elongation of prostatic buds and expression of genes involved in epithelial cell migration Article Snippet: Reagent or resource Source Identifier Antibodies Rabbit Monoclonal Anti-SOX9 Abcam Cat# ab185230, RRID: AB_2715497 Rabbit Monoclonal Anti-CDH1 Cell Signaling Cat#: 3195, RRID: AB_2291471 Biotinylated Goat Anti-rabbit IgG Vector Labs Cat#: BA-1000, RRID: AB_2313606 Horse Anti-rabbit IgG, ImmPRESS VR Reagent Vector Labs Cat#: MP-6401, RRID: AB_2336529 Bacterial and Virus Strains None Biological Samples Goat Serum Millipore-Sigma Cat#: G9023 Bovine Serum Albumin Millipore-Sigma Cat#: 29-102-5 GM Trypsin Difco Cat#: 215240 Collagenase Millipore-Sigma Cat#: C9891 Chemicals, Peptides, and Recombinant Proteins Bluo-gal Gold Biotechnology Cat#: B-673-250 Critical Commercial Assays Agilent RNA 6000 Pico Agilent Technologies Cat#: 5067-1513 GeneChip Mouse Gene 1.0 ST Array ThermoFisher Scientific Cat#: 901171 Deposited Data RNA Microarray Data NCBI GEO Database GSE113011 ; reviewer token mhizgciwxxcxbyl Experimental Models: Cell Lines None Experimental Models: Organisms/Strains Mouse: C57BL/6J Jackson Laboratory Stock#:000664, RRID: IMSR_JAX: 000664 Mouse: B6.129S4-Gt(ROSA)26 sortm1Sor /J Jackson Laboratory Stock# 003474, RRID: IMSR_J AX: 003474 Mouse: B6. .. CgShh tm1(EGFP/cre)Cjt /J Jackson Laboratory Stock#005622; RRID: IMSR_J AX: 005622 Mouse: B6.129S7-Sox9 tm2Crm /J Jackson Laboratory Stock#: 013106, RRID:IMSR_JAX:013106 Oligonucleotides See Supplemental Table 11 for SYBR Green Assay:Article Title: The Developmental and Genetic Architecture of the Sexually Selected Male Ornament of Swordtails. Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, Peptides, and Recombinant Proteins TRIzol Reagent Invitrogen Cat#15596026 dNTPs (Set, 100mM) Sigma-Aldrich Cat#DNTP100 DNase, RNase-free Thermo Scientific Cat#EN0521 SYBR Green I (10 000x in DMSO) Invitrogen Cat#S7563 Q5 High Fidelity DNA Polymerase New England Biolabs Cat#M04915 Critical Commercial Assays AmpliCap-Max T7 High Yield Message Maker Kit Biozym Cat#150472 RevertAid First Strand cDNA Synthesis Kit Thermo Scientific Cat#K1621 Deposited Data kcnh8 sequences this paper https://github.com/dukecomeback/swordtail/blob/main/ kcnh8_Xiphophorus.fa RNA-seq short read sequences 16 and this paper ENA accession code PRJEB8012 and PRJNA673149 Experimental Models: Organisms/Strains Xiphophorus hellerii, Rio Lancetilla strain Biocenter Würzburg WLC1337 Xiphophorus maculatus, Rio Jamapa strain Jp163A Biocenter Würzburg WLC6628 Xiphophorus montezumae, Tamasops strain Biocenter Würzburg WLC1052 Xiphophorus monticolus, El Tejon strain Biocenter Würzburg WLC3344 Xiphophorus pygmaeus, strain Rio Axtla Biocenter Würzburg WLC3015 Priapella lacandonae Biocenter Würzburg WLC5281 Oryzias latipes, Carbio strain Biocenter Würzburg WLC2674 Oligonucleotides Oligonucleotide Primers for PCR see Table S3 for cDNA Synthesis:Article Title: The Developmental and Genetic Architecture of the Sexually Selected Male Ornament of Swordtails. Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, Peptides, and Recombinant Proteins TRIzol Reagent Invitrogen Cat#15596026 dNTPs (Set, 100mM) Sigma-Aldrich Cat#DNTP100 DNase, RNase-free Thermo Scientific Cat#EN0521 SYBR Green I (10 000x in DMSO) Invitrogen Cat#S7563 Q5 High Fidelity DNA Polymerase New England Biolabs Cat#M04915 Critical Commercial Assays AmpliCap-Max T7 High Yield Message Maker Kit Biozym Cat#150472 RevertAid First Strand cDNA Synthesis Kit Thermo Scientific Cat#K1621 Deposited Data kcnh8 sequences this paper https://github.com/dukecomeback/swordtail/blob/main/ kcnh8_Xiphophorus.fa RNA-seq short read sequences 16 and this paper ENA accession code PRJEB8012 and PRJNA673149 Experimental Models: Organisms/Strains Xiphophorus hellerii, Rio Lancetilla strain Biocenter Würzburg WLC1337 Xiphophorus maculatus, Rio Jamapa strain Jp163A Biocenter Würzburg WLC6628 Xiphophorus montezumae, Tamasops strain Biocenter Würzburg WLC1052 Xiphophorus monticolus, El Tejon strain Biocenter Würzburg WLC3344 Xiphophorus pygmaeus, strain Rio Axtla Biocenter Würzburg WLC3015 Priapella lacandonae Biocenter Würzburg WLC5281 Oryzias latipes, Carbio strain Biocenter Würzburg WLC2674 Oligonucleotides Oligonucleotide Primers for PCR see Table S3 for RNA Sequencing:Article Title: The Developmental and Genetic Architecture of the Sexually Selected Male Ornament of Swordtails. Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, Peptides, and Recombinant Proteins TRIzol Reagent Invitrogen Cat#15596026 dNTPs (Set, 100mM) Sigma-Aldrich Cat#DNTP100 DNase, RNase-free Thermo Scientific Cat#EN0521 SYBR Green I (10 000x in DMSO) Invitrogen Cat#S7563 Q5 High Fidelity DNA Polymerase New England Biolabs Cat#M04915 Critical Commercial Assays AmpliCap-Max T7 High Yield Message Maker Kit Biozym Cat#150472 RevertAid First Strand cDNA Synthesis Kit Thermo Scientific Cat#K1621 Deposited Data kcnh8 sequences this paper https://github.com/dukecomeback/swordtail/blob/main/ kcnh8_Xiphophorus.fa RNA-seq short read sequences 16 and this paper ENA accession code PRJEB8012 and PRJNA673149 Experimental Models: Organisms/Strains Xiphophorus hellerii, Rio Lancetilla strain Biocenter Würzburg WLC1337 Xiphophorus maculatus, Rio Jamapa strain Jp163A Biocenter Würzburg WLC6628 Xiphophorus montezumae, Tamasops strain Biocenter Würzburg WLC1052 Xiphophorus monticolus, El Tejon strain Biocenter Würzburg WLC3344 Xiphophorus pygmaeus, strain Rio Axtla Biocenter Würzburg WLC3015 Priapella lacandonae Biocenter Würzburg WLC5281 Oryzias latipes, Carbio strain Biocenter Würzburg WLC2674 Oligonucleotides Oligonucleotide Primers for PCR see Table S3 for Polymerase Chain Reaction:Article Title: The Developmental and Genetic Architecture of the Sexually Selected Male Ornament of Swordtails. Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, Peptides, and Recombinant Proteins TRIzol Reagent Invitrogen Cat#15596026 dNTPs (Set, 100mM) Sigma-Aldrich Cat#DNTP100 DNase, RNase-free Thermo Scientific Cat#EN0521 SYBR Green I (10 000x in DMSO) Invitrogen Cat#S7563 Q5 High Fidelity DNA Polymerase New England Biolabs Cat#M04915 Critical Commercial Assays AmpliCap-Max T7 High Yield Message Maker Kit Biozym Cat#150472 RevertAid First Strand cDNA Synthesis Kit Thermo Scientific Cat#K1621 Deposited Data kcnh8 sequences this paper https://github.com/dukecomeback/swordtail/blob/main/ kcnh8_Xiphophorus.fa RNA-seq short read sequences 16 and this paper ENA accession code PRJEB8012 and PRJNA673149 Experimental Models: Organisms/Strains Xiphophorus hellerii, Rio Lancetilla strain Biocenter Würzburg WLC1337 Xiphophorus maculatus, Rio Jamapa strain Jp163A Biocenter Würzburg WLC6628 Xiphophorus montezumae, Tamasops strain Biocenter Würzburg WLC1052 Xiphophorus monticolus, El Tejon strain Biocenter Würzburg WLC3344 Xiphophorus pygmaeus, strain Rio Axtla Biocenter Würzburg WLC3015 Priapella lacandonae Biocenter Würzburg WLC5281 Oryzias latipes, Carbio strain Biocenter Würzburg WLC2674 Oligonucleotides Oligonucleotide Primers for PCR see Table S3 for Software:Article Title: The Developmental and Genetic Architecture of the Sexually Selected Male Ornament of Swordtails. Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Chemicals, Peptides, and Recombinant Proteins TRIzol Reagent Invitrogen Cat#15596026 dNTPs (Set, 100mM) Sigma-Aldrich Cat#DNTP100 DNase, RNase-free Thermo Scientific Cat#EN0521 SYBR Green I (10 000x in DMSO) Invitrogen Cat#S7563 Q5 High Fidelity DNA Polymerase New England Biolabs Cat#M04915 Critical Commercial Assays AmpliCap-Max T7 High Yield Message Maker Kit Biozym Cat#150472 RevertAid First Strand cDNA Synthesis Kit Thermo Scientific Cat#K1621 Deposited Data kcnh8 sequences this paper https://github.com/dukecomeback/swordtail/blob/main/ kcnh8_Xiphophorus.fa RNA-seq short read sequences 16 and this paper ENA accession code PRJEB8012 and PRJNA673149 Experimental Models: Organisms/Strains Xiphophorus hellerii, Rio Lancetilla strain Biocenter Würzburg WLC1337 Xiphophorus maculatus, Rio Jamapa strain Jp163A Biocenter Würzburg WLC6628 Xiphophorus montezumae, Tamasops strain Biocenter Würzburg WLC1052 Xiphophorus monticolus, El Tejon strain Biocenter Würzburg WLC3344 Xiphophorus pygmaeus, strain Rio Axtla Biocenter Würzburg WLC3015 Priapella lacandonae Biocenter Würzburg WLC5281 Oryzias latipes, Carbio strain Biocenter Würzburg WLC2674 Oligonucleotides Oligonucleotide Primers for PCR see Table S3 for Article Title: The novel HLA-DQB1*03:282N allele was identified in a Chinese individual. Article Snippet: The HLA region contains the most polymorphic loci of the human genome and plays a significant role in immunity and disease susceptibility.. The HLA-DQB1 locus is located in the class II region of the human major histocompatibility complex, and a total of 1968 HLA-DQB1 alleles including 31 HLA-DQB1*03 null alleles have been identified in populations around the world according to the IPD-IMGT/HLA Database version 3.43.0 (January 2021).. In this report, we describe the novel allele, now named HLA-DQB1*03:282N, that has been identified in a Chinese aplastic anemia patient. Article Title: Cocaine-related DNA methylation in caudate neurons alters 3D chromatin structure of the IRXA gene cluster. Article Snippet: Genomic DNA from both cohorts (2 μg/sample), as well as from all sorted nuclear fractions (>100 ng/sample) was converted using EpiTect Fast 96 Bisulfite Conversion Kits (Qiagen, Montreal, Canada), diluted to 150 μL using MilliQ water, and stored at −20 °C. .. To optimize our ability to cover the desired CpGs within each amplicon, and to increase amplicon diversity for sequencing, we designed three pairs of bisulfite-specific primers per DNA strand using Article Title: Evaluating the contribution of the gene TARDBP in Italian patients with amyotrophic lateral sclerosis. Article Snippet: Peripheral blood samples were collected from patients after written informed consent and genomic DNA was extracted using the Wizard Genomic DNA Purification Kit (Promega). .. Coding exons and flanking intronic regions of TARDBP (NM_007375.4) were sequenced on an ABI3130XL Genetic Analyzer (Applied Biosystems), using standard protocols for Sanger sequencing, and analysed using Article Title: First report of the invasive snail Pomacea canaliculata in Kenya Article Snippet: Sanger sequencing was undertaken using an ABI 3130 Genetic Analyser in accordance with the manufacturer’s instructions. .. Sequence trace files were examined for quality using the Article Title: Sox9 in mouse urogenital sinus epithelium mediates elongation of prostatic buds and expression of genes involved in epithelial cell migration Article Snippet: Reagent or resource Source Identifier Antibodies Rabbit Monoclonal Anti-SOX9 Abcam Cat# ab185230, RRID: AB_2715497 Rabbit Monoclonal Anti-CDH1 Cell Signaling Cat#: 3195, RRID: AB_2291471 Biotinylated Goat Anti-rabbit IgG Vector Labs Cat#: BA-1000, RRID: AB_2313606 Horse Anti-rabbit IgG, ImmPRESS VR Reagent Vector Labs Cat#: MP-6401, RRID: AB_2336529 Bacterial and Virus Strains None Biological Samples Goat Serum Millipore-Sigma Cat#: G9023 Bovine Serum Albumin Millipore-Sigma Cat#: 29-102-5 GM Trypsin Difco Cat#: 215240 Collagenase Millipore-Sigma Cat#: C9891 Chemicals, Peptides, and Recombinant Proteins Bluo-gal Gold Biotechnology Cat#: B-673-250 Critical Commercial Assays Agilent RNA 6000 Pico Agilent Technologies Cat#: 5067-1513 GeneChip Mouse Gene 1.0 ST Array ThermoFisher Scientific Cat#: 901171 Deposited Data RNA Microarray Data NCBI GEO Database GSE113011 ; reviewer token mhizgciwxxcxbyl Experimental Models: Cell Lines None Experimental Models: Organisms/Strains Mouse: C57BL/6J Jackson Laboratory Stock#:000664, RRID: IMSR_JAX: 000664 Mouse: B6.129S4-Gt(ROSA)26 sortm1Sor /J Jackson Laboratory Stock# 003474, RRID: IMSR_J AX: 003474 Mouse: B6. .. CgShh tm1(EGFP/cre)Cjt /J Jackson Laboratory Stock#005622; RRID: IMSR_J AX: 005622 Mouse: B6.129S7-Sox9 tm2Crm /J Jackson Laboratory Stock#: 013106, RRID:IMSR_JAX:013106 Oligonucleotides See Supplemental Table 11 for other:Article Title: P711 Back to the future: The MHC complement genes revisited in transplant and disease Article Snippet: Aim: The Gamma block is in the central Major Histocompatibility Complex (MHC) region between MICB and HLA-DRB genes and contains many inflammatory and immune regulatory genes, such as C2, CFB, and C4.. The protein allotypes of these genes were important in defining the original polymorphic frozen block structure of MHC in the 1990s and were used in transplantation and disease association studies.. However, molecular assays for C2, CFB, and C4 have not been developed in parallel with HLA typing and the Gamma block genes are rarely typed today. Article Title: Compositions and methods for single G-level HLA typing Article Snippet: For example, DNA Sequencing:Article Title: The novel HLA-DQB1*03:282N allele was identified in a Chinese individual. Article Snippet: The HLA region contains the most polymorphic loci of the human genome and plays a significant role in immunity and disease susceptibility.. The HLA-DQB1 locus is located in the class II region of the human major histocompatibility complex, and a total of 1968 HLA-DQB1 alleles including 31 HLA-DQB1*03 null alleles have been identified in populations around the world according to the IPD-IMGT/HLA Database version 3.43.0 (January 2021).. In this report, we describe the novel allele, now named HLA-DQB1*03:282N, that has been identified in a Chinese aplastic anemia patient. Article Title: Evaluating the contribution of the gene TARDBP in Italian patients with amyotrophic lateral sclerosis. Article Snippet: Peripheral blood samples were collected from patients after written informed consent and genomic DNA was extracted using the Wizard Genomic DNA Purification Kit (Promega). .. Coding exons and flanking intronic regions of TARDBP (NM_007375.4) were sequenced on an ABI3130XL Genetic Analyzer (Applied Biosystems), using standard protocols for Sanger sequencing, and analysed using Article Title: First report of the invasive snail Pomacea canaliculata in Kenya Article Snippet: Sanger sequencing was undertaken using an ABI 3130 Genetic Analyser in accordance with the manufacturer’s instructions. .. Sequence trace files were examined for quality using the Amplification:Article Title: Cocaine-related DNA methylation in caudate neurons alters 3D chromatin structure of the IRXA gene cluster. Article Snippet: Genomic DNA from both cohorts (2 μg/sample), as well as from all sorted nuclear fractions (>100 ng/sample) was converted using EpiTect Fast 96 Bisulfite Conversion Kits (Qiagen, Montreal, Canada), diluted to 150 μL using MilliQ water, and stored at −20 °C. .. To optimize our ability to cover the desired CpGs within each amplicon, and to increase amplicon diversity for sequencing, we designed three pairs of bisulfite-specific primers per DNA strand using Sequencing:Article Title: Cocaine-related DNA methylation in caudate neurons alters 3D chromatin structure of the IRXA gene cluster. Article Snippet: Genomic DNA from both cohorts (2 μg/sample), as well as from all sorted nuclear fractions (>100 ng/sample) was converted using EpiTect Fast 96 Bisulfite Conversion Kits (Qiagen, Montreal, Canada), diluted to 150 μL using MilliQ water, and stored at −20 °C. .. To optimize our ability to cover the desired CpGs within each amplicon, and to increase amplicon diversity for sequencing, we designed three pairs of bisulfite-specific primers per DNA strand using Article Title: Evaluating the contribution of the gene TARDBP in Italian patients with amyotrophic lateral sclerosis. Article Snippet: Peripheral blood samples were collected from patients after written informed consent and genomic DNA was extracted using the Wizard Genomic DNA Purification Kit (Promega). .. Coding exons and flanking intronic regions of TARDBP (NM_007375.4) were sequenced on an ABI3130XL Genetic Analyzer (Applied Biosystems), using standard protocols for Sanger sequencing, and analysed using Article Title: First report of the invasive snail Pomacea canaliculata in Kenya Article Snippet: Sanger sequencing was undertaken using an ABI 3130 Genetic Analyser in accordance with the manufacturer’s instructions. .. Sequence trace files were examined for quality using the Article Title: Sox9 in mouse urogenital sinus epithelium mediates elongation of prostatic buds and expression of genes involved in epithelial cell migration Article Snippet: Reagent or resource Source Identifier Antibodies Rabbit Monoclonal Anti-SOX9 Abcam Cat# ab185230, RRID: AB_2715497 Rabbit Monoclonal Anti-CDH1 Cell Signaling Cat#: 3195, RRID: AB_2291471 Biotinylated Goat Anti-rabbit IgG Vector Labs Cat#: BA-1000, RRID: AB_2313606 Horse Anti-rabbit IgG, ImmPRESS VR Reagent Vector Labs Cat#: MP-6401, RRID: AB_2336529 Bacterial and Virus Strains None Biological Samples Goat Serum Millipore-Sigma Cat#: G9023 Bovine Serum Albumin Millipore-Sigma Cat#: 29-102-5 GM Trypsin Difco Cat#: 215240 Collagenase Millipore-Sigma Cat#: C9891 Chemicals, Peptides, and Recombinant Proteins Bluo-gal Gold Biotechnology Cat#: B-673-250 Critical Commercial Assays Agilent RNA 6000 Pico Agilent Technologies Cat#: 5067-1513 GeneChip Mouse Gene 1.0 ST Array ThermoFisher Scientific Cat#: 901171 Deposited Data RNA Microarray Data NCBI GEO Database GSE113011 ; reviewer token mhizgciwxxcxbyl Experimental Models: Cell Lines None Experimental Models: Organisms/Strains Mouse: C57BL/6J Jackson Laboratory Stock#:000664, RRID: IMSR_JAX: 000664 Mouse: B6.129S4-Gt(ROSA)26 sortm1Sor /J Jackson Laboratory Stock# 003474, RRID: IMSR_J AX: 003474 Mouse: B6. .. CgShh tm1(EGFP/cre)Cjt /J Jackson Laboratory Stock#005622; RRID: IMSR_J AX: 005622 Mouse: B6.129S7-Sox9 tm2Crm /J Jackson Laboratory Stock#: 013106, RRID:IMSR_JAX:013106 Oligonucleotides See Supplemental Table 11 for |